Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000201 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000201 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26222
Total Scaffold Genes	51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (7.84%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

26222

Total Scaffold Genes

51 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (7.84%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (16.67%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000716	Metagenome / Metatranscriptome	923	Y
F008546	Metagenome / Metatranscriptome	331	Y
F022861	Metagenome / Metatranscriptome	212	Y
F038081	Metagenome	166	N
F046328	Metagenome / Metatranscriptome	151	N
F060624	Metagenome / Metatranscriptome	132	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100020110	F000716	N/A	MEKLKQNIKEYQLNADKNHIKYEQDGYNHYQNYLYKRALYGLNSLTEEELVTMCSKKKQRIINVYKRAQIVLNTFKQTATISYTNFLFKTLFPNSPITQFLLSETKTDDKFKNILTFKDLNISKEQIISIFMIEGILPKNFLSLEIPQNQLPRLKNANKA
Ga0208974_100020115	F022861	N/A	MKAVCIDSSNKPKKIPDSEWITEGTTYTITRIVRMGLEKNKYGVLLKEVQLSSQSFPYELYDAARFLPLDLLANMKEEEEVTVREADLELI
Ga0208974_100020120	F008546	N/A	MKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAGINPFLCLPMNHYTIEVKTFKGRAIIALAFSIGFIVGILTIRPFFI
Ga0208974_100020127	F060624	AGAAGG	MFLPVEFKDKDGSYYEQLNVTHITRTSFINRMNPDAGSKIHMRTGEVLTTSVPYDILSTAIDECWKSAASMIMFSILAEKAKILSVKDLDSEDLEPSASTE
Ga0208974_100020137	F046328	N/A	MGLSTTDLGTGTGSGMPKTIGPGNHTLTINSMHLEDFQFIDGAKHLILNVETEPIEGFEGFMIDKDDESKGHHKGQIGRVKASQYAFADGETKSGIKIQRDRSIMIFLSNMSKNLEFYEWFVEQDNKFNTIEDFVKNFNDKAPYKGIPIEFCIAGKEYINKSGYINYDMWLPKAENKTYAYGENVMVYNEAKHLKKVEVKEVKNFGDDEDDFTTPSKGSSDFSLD
Ga0208974_100020143	F038081	N/A	MNFNKEETRNILNMLLSKDKENSIIALSCLNNFSKKEHLGELLVLYQFGRTPAEVWKENCKKGFKYIKNVLPFKSSDYRLPSSKVFNELVNNKCSKESVELYLELFTNDFSNHLYGMGYPTDKLDIQIKIKE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000201

Overview

Ecosystem & Geography

Associated Families

Sequences