Scaffold Ga0208974_1000161

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000161
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29256
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (10.42%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (10.00%)
• Associated Families: 10

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004366	Metagenome / Metatranscriptome	441	Y
F008546	Metagenome / Metatranscriptome	331	Y
F013186	Metagenome / Metatranscriptome	273	N
F017298	Metagenome / Metatranscriptome	241	Y
F019139	Metagenome / Metatranscriptome	231	Y
F037224	Metagenome	168	Y
F038670	Metagenome	165	N
F061550	Metagenome	131	Y
F074877	Metagenome	119	N
F075858	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100016111	F038670	N/A	MITILGKEIPNQLDELTIDQFEVITELSNNKELDAVDRHLQIFGSLGLAESEFYDVDVADFIEYTNQFNTIPEIEYPTISNIELAGYSYTAELKLTVRDTKLIEKIAISKPKGYISDILAIFFKRDDLTPAEHYAEAHLKLKAKLIKELKANIAIPYLLFITNKLIKQVDKVEDVLAEEV
Ga0208974_10001612	F037224	N/A	MHSDILHKIQVVQAYIHHKTGKQVRIVFNRPDRMQQHLALLDQAYMIAMNEFKNTNAK
Ga0208974_100016124	F074877	N/A	MTTEQMTATILLYSIELRDEYNEMAGAFGHTDPATQRLQTKYVTLLILIEKLGLDENY
Ga0208974_100016126	F017298	GGA	METNENEFTQTTFSLKRKMLWWREQSVEGDKGGSFNLELYLDYLSEQDFNEIKQDK
Ga0208974_100016127	F008546	N/A	MKEVKWWKLLIVFFSAIVLEANSIAGFRFLMDEHWMGMVMMAAINPFLCLPMNHYTIEVKTFKGRAIIALAFSIGFVVGILTIRPFFI
Ga0208974_100016132	F061550	N/A	MELELLKARTILRKTLLKLKVSREEIEEKNEHRKDLINSMLETENELSEVLTTFLILEKQAREFSQSAYRLERLNLDLKFKIKDLENQIEVNNF
Ga0208974_100016143	F075858	N/A	MLIDDHSLREYLLEALKTRTRNQIVKEIQGRGETFHQYNIDRFLQGKDVSLETAKKLDKYIYRIKIYDCNLF
Ga0208974_100016146	F013186	N/A	MKKLLDNYISRAYPEVRAYTAYFLSKMGLYLDADTVINNSYLHVLTINDNTSDEDKVKAYLLNTIKYQILWSTSKSHKDDRITSIIDNSPDRIDGDELNDKIKEDRNYSFQKGLLEIYRLSLKDNVQRIVFEAYIDKGYITSRSLATYFGITHTSAYYLIKDLKQNLNELQYRYESESIY
Ga0208974_100016147	F019139	N/A	MKTKTEHLGKYITTYNGNFETSFTVTEETAKDHKYYTSIGLGYLFEESTPKVKYTGVENTKKDKDA
Ga0208974_10001616	F004366	N/A	MNSLQAITNHIIAFYTAHKQVFKVGSDFKEQLYNFATQDEKYPLVYIVPSGVIPTENTTEFNFDIYCYDIIQKDRANIITILSDTQQILSDLNVYFTDSSDYSFDVVGVPTFTPINNELLDYAAGYQMSITLTVNDWTDCAVPI