Scaffold Ga0208974_1000156

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000156
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30026
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (35.29%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Associated Families: 10

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009945	Metagenome	310	Y
F011473	Metagenome	290	Y
F016246	Metagenome	248	Y
F016922	Metagenome	243	Y
F026794	Metagenome	196	Y
F037053	Metagenome	168	Y
F051685	Metagenome	143	N
F051687	Metagenome	143	N
F067392	Metagenome	125	N
F094889	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100015614	F037053	N/A	MNTPTVDDIIADLESRGLGWSLDNTGRLIEARVWDWPHVIGRYRPHTVEPLAKMLATACFAVDWTKYPVKA
Ga0208974_100015615	F009945	GAG	MSTALATFKRENGVATHRLAGAGHRYAWMAFFERITMKDGTRRAFTELAHEYSMASLMRRDKVADDETELSACKLLAERNGIPWPADEPKRKAKP
Ga0208974_100015617	F026794	GGA	MPDFHNSISERDLRVTASQLRHAENDAREATRGEVTFDELDRRYADPISREELTALLPFIIAFTERETVWCYELKERHGRPTPTWTPITEWDGHFRHECLSLEYRTDNPFATE
Ga0208974_100015620	F016922	AGGAGG	VSNPIRINSRAIRCVADAEGATEYAIRYGGRDFIVTAHSRLEADIAVEYYRAPEADESQPDLLK
Ga0208974_100015623	F011473	N/A	MNWKKYITDPLTSRPRRGAISRIAALLGTHYGNVRRMFDGIWNPTEQEAESLRAIVASRTNLAPKKRSDAGKKRGEYRKRAVAKSGVVRPQLKGLRSAKKTA
Ga0208974_100015626	F051685	N/A	MNTPNWIRFRAGERAHVVTGMSGPMLIIPCGYAAHGATGVPDKRAKKCRTCSRAVRPVSPQEWRKAGHAPE
Ga0208974_10001563	F016246	N/A	MSQLDMFPHIPRRLTHEEILAGFAELLRAVEAMEFWDPWP
Ga0208974_100015637	F067392	N/A	MVGTLSSVTFDGPGRYVRPFQDRGDTQSFEWHIDCYQLAANFTPFQNARYYSPGFVSPVENMQYVTTALGTAYLVHEEQPEYTACKGWLKFKRVYASLPITRQEGTSVVHSFQFYSTSASYDWTEPPPAPEVAEWPLVCTGYYLYEYFLSYWPEPLRAPKITSLFGFLLMTNQVPPNTGTFVSKDSEISIYKGSIIERKTLYVNTPTIAELSA
Ga0208974_100015639	F094889	AGG	VSDATLDEHADALDSERKDRAVAMLGLPELIAGVQVEPLTPRRLEWLRAMGNPFVCGGDCPIAAIPDFIWYVTKDFAFGDDERRKAFLAAILDLDVDEARDGIDEYLDRAFLDAGPGREGVSFYGSTAGLYCSLNTAYPGAGWHLERVLDTPLRVLYQLIKAADDARGCSMQNRRSSPLISKFLSEIEHFELSIVADFDAEMDAFVDAKCAEGYKLCSEPIQKINLAIPAACQQDAPWIVPMRKVS
Ga0208974_100015642	F051687	N/A	MRNSGFKMDMSGIRRKQRELAAIPARIFKPEISNYFLRPSLNKAKAATPVRDLATIRENQTGKPNSQYAKWRARGGGQGVTKAQFLADRAPARFLFQLQWVQVGYSLGVNVTASAAVLSATTRNHDEPDIPQGRGQWHGGETKLTASISVPFLDAPERKYKPFTGQGILTPIMAAQFPVFNRACERKMKRAVAAIARS