Scaffold Ga0208974_1000141

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000141
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31356
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (30.43%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F040698	Metagenome	161	N
F061533	Metagenome	131	N
F073100	Metagenome	120	N
F094938	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100014111	F040698	N/A	MNKTPELNAKTLGRGQRKKWDMDKIESLFMGGAEMSDILKLPEFSLMSKFYLKNCMVKGKWIDKRKRLREEVANVVAPKLEDAMASETIAHYAFMLREIAAERVQIETRHKSGNIKDQAQRLDVLAEYEKIATRALGLDENNMHDKKGLSVNAMISLHVSGPTKADKVEIVSTQYVSEAEGLENDEKSDTE
Ga0208974_10001412	F094938	N/A	VRGTTPVHKKLMKDKPTTTEVEVKTEVKTESTPVVDSALKREIYLRLISASAADGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK
Ga0208974_100014133	F073100	N/A	MDNTNDDKVIDKEAERMLAAVRQTVLITNMSLAAALNTSLLAEYESEEGICNMALKPNNTAILATTSATGLTIYKSHFFINDDAIGEQRHIYKCENEDDADTLWATINDKMFEWSRGEIKSVDI
Ga0208974_100014137	F023326	N/A	MSRIFSGNTGIQKYGIKFPENMDELGVELYCYAISKGEYGKDYCNKHNINLSDFKLLTPYEHFLKAVKLQWPTEVSIVNRGYTNNQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGQSNFDTVSPEMDKWDTETGVCLFYNGMRSPNFAAPEHEPSPFPFLMDRKKQQVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTNEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTIAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRASGVQPTKFGMDVSGDGGRVAQAIIREWLKHDSSGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYTIKSKKISVETKDDYKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWARDEKPVESIMDDDSYSSDENGDW
Ga0208974_100014138	F021128	AGG	MKLKNRNLAPVGSWYYKYEIKRDKLTFPAVVYGSTWSNLISNIQKDCRSNGIEVPENLEQLVEDQICQRQPSDRCWYADGIGDRIAQAIHTVAAVTDKVLGTKLEHKARGCSSCNRRRNALNSLS
Ga0208974_100014142	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGQSGHKWMGITTDDGTYCGLVDDNAWFVPEHTLNNEAGYDLCAIRVKLAPANLNTIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNATLPAYNEADPATWARLVRVPRYIKTVLEQGCAYIPNRAYRTADFGISVAMVNKAMCKWTMPSSTGYGQAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPQSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS
Ga0208974_100014145	F017989	N/A	MATPALSQPCFVDLTPDQQNFNIYDSLKQIAGFDIPAYDQIDIAYYGTTNNIATVQYLFDGVPVATLNLFYSVNPPTTNDANLTTITVTYP
Ga0208974_10001415	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNNQEQSIKNNVVTLSSVRGKHGMTGVTLEHESYEGKNGKVDRDIIKVTATGKIEFESEEPARVTAKVIVTDNPTEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEVKAEPKAEPKVVEQELDPADWASAVVPSGTQKGKKLAEIGKPALTKIYEFYLEKGFNSPFAKCVEQAAADLDLDAPFPADDIPY