Scaffold Ga0208974_1000138

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000138
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 31580
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (26.53%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015061	Metagenome / Metatranscriptome	257	Y
F017989	Metagenome	237	Y
F021128	Metagenome	220	N
F023326	Metagenome	210	Y
F025268	Metagenome / Metatranscriptome	202	N
F040698	Metagenome	161	N
F061533	Metagenome	131	N
F073100	Metagenome	120	N
F089880	Metagenome	108	N
F090571	Metagenome	108	N
F094938	Metagenome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100013812	F040698	N/A	MNKTPELDAKTLGRGQRKKWDMDKIESLFMGGAEMSDILKLPEFSLMSKFYLKNCMVKGKWIDKRKRLREEVANVVAPKLEDAMASETIAHYAFMLREIAAERVQIETRHKSGNIKDQAQRLDVLAEYEKIATRALGLDENNMHDKKGLSVNAMISLHVSGPTKADKVEIVSTQYVDAAEGLENDGKSDTE
Ga0208974_10001382	F094938	N/A	MCCRFALVNGTTPVHKKLMKDKPTTTEPEVKTEVKPAIDFALKREIYLRLVSASAADGKFDLGKLPNAKAVVNQGDHLRGVAELLTQCLK
Ga0208974_100013831	F090571	AGGAGG	MSTDKAYGKASRFMDAALTIWESQDKERYCIAENYWNEGMKIYNEYFIQRKVLTELQDIDSLLP
Ga0208974_100013835	F073100	N/A	MDNTNENNAVNKDAERMLAAIKQTVLVTNMSLATALNTGFIAQYESEEGICNMALKPNNTAVVAITAASGLTIYQSNFFISDNDEIGEHRYIYKFENEDNADEIWDKINDQMYQWSRNEIKSVSLE
Ga0208974_100013839	F023326	N/A	MSRIFSGNTGIQKYGIKFPENMDELGVELYCYAISKGEYGKDYCNKHNINLSDFKLLTPYEHFLKAVKLQWPTEVSIVNRGYTNTQLLRTLEELCNNDDICLAGAASMGKSFPVGLWVYLDWCSAPHCTSSWVATTTLGASEDRIWGIISKLWKSAAVQFGKLIDYRHMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRIRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGASNFDTVSPEMDKWETETGVCLFYNGMRSPNFAAPEHEPSPFPFLMDRKKQQVMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNADTDEEPLWDSEGFHKIAGFDTAFTVGGDRCVLTVAKLGYIRGTRNRVMWLEKQKVIQLSAREAAEFEVGLAKEVVELCRAAGVQPTKFGMDVSGDGGRVAQAIIREWLRYDASGHSIALISSMGKPTERMAAEVDKRPCKDVYDRLVSEYWYSAYHGFKSRVIYGVGAASELARELCIRRYTIKSKKISVETKDDFKGRTGYSPDLADSFLYCLEMSRRFGLVFIGNDKAVPTNRFWAREEKPVESTMDDDYSTDDWGED
Ga0208974_100013840	F021128	AGG	MKLKNRNLAPVGGWYYKYEIKRDKLTFPAIVYGSTWSSLISNIQKDCRSNGVTIPENIEQIVEDQICQRQPSDRCWYADGLGDNIAQAIHTVARVADKVLGTKFEHKARGCSSCNRRRNALNSLS
Ga0208974_100013845	F025268	N/A	MSDQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRQITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGSGHKWMGITTDDGTYCGLVDDGAWFVPEHTINNEAGYDLCALRVKIATADLGKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADSAFNASLPAFNEADPATWPRLVRVPRYIKTVLEQGCAYIPNRAYRNADFGISVAMVNKAMVKWTMPSNSGYGQAQQMTQNYAGDWEWKNPDWECNRWRKTGFYQAQFRLAAQVKDPTIMHSFLHRMPKSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS
Ga0208974_100013848	F017989	N/A	MATPALSQPCFVDLTPDQQNFNVYDSLKQIAGFDIPAYDQIDISYYGSTNNIATVQYLNAGDVVATLTLTYAVQPPTTSDANLTGVTVAYP
Ga0208974_10001385	F061533	N/A	MSNQLDGIEQKDIIKRVTGKVTKLWEPKTFNGPKGEFVIQGGEIEIDGQTYGLKFFNNNQEQSIKNNVVTLSSVRGKHGLTGVTLEHESYEGKNGKVDRDIIKVTATGKIEFESEEPARVTSTPKVIVTDNPTEALDKIVELHKYVDSLVRHAYKGVEDEETLRAYVSSVFIEANRKGIAFKSEVKAEPKAEPKVVEQELDPADWASAVVPSGSQKGKKLAEIGKPALTKLYEFYLEKGFSTPFAKCVEQAAADLDLDAPVETDDIPY
Ga0208974_10001386	F089880	N/A	MKKELELFSPTQEGILVSVTTYLRQMVEFAKTEWRGITINETHIKKAWAKLQKNEYLEDDAPDEMLEMYEKMSADWDMAIEMEEERINLANMPVVEEEPENESLALVESVKQGLELSSFTKKFDIGAGMTQCVPRGKVEMKDWVAAFAFGLTLESGAQWIIGDAVVALDNAGHDDVVNQLCANFKKSYSTVSGYARACRAFPAAKRDAALPFTVYREIGNANFGDEKTNAKKQQAMLEVAKAEGLSSTEVRNRVRNEQGKDDKSVLPHRYLVLNVGNYGNSEVKRSVPDKLEAHHFLIDRQDMSWFDAAQGEWVKFSKEQ
Ga0208974_10001387	F015061	AGGA	MSEKNQQNETSKTILEAFSFIKCDDEKLNERVHAFASLLHTASMMVIKSESRKGEGFEAIKHMELAFFYYRESQFRKRFDTEEKEEEAPRIIT