Scaffold Ga0208974_1000124

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000124
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 34065
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (70.37%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004450	Metagenome	437	Y
F018719	Metagenome	233	Y
F019103	Metagenome	231	Y
F049420	Metagenome	146	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100012432	F018719	N/A	MTLTFNTWARATLDNFALEAYLRLQQQQDQIEQLRCNFKDAIEAYWAVMREKAPSHRFFA
Ga0208974_100012441	F004450	GAG	MNWLAAGLVALVMSAAYLLDGPSEHEAQVDTTEEKIQRMCGENAGWKMLDDKSIQCFTHRGHKTKKVTL
Ga0208974_100012442	F019103	N/A	MNKTPVWTTGYKPTKEDLKGLCNHRFETAGGLVLDCYLAFEKEERATFDDPGCAAAVELIWALVEGVDISEVLGDLAETIEEEALSDLEDQIEDAALERGKE
Ga0208974_100012447	F049420	AGGA	MALTNFKKEEIPEGKSDLLCSVDGCSSRWSVRIDGQMPKCSHHQWQQPKYGNTKTYGQYLADKDSPGVPPVSTWYNKEPW