Scaffold Ga0208974_1000085

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000085
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41399
• Total Scaffold Genes: 72
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 58 (80.56%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017442	Metagenome	240	Y
F017592	Metagenome	239	Y
F018002	Metagenome / Metatranscriptome	237	N
F032530	Metagenome	179	Y
F034044	Metagenome	175	Y
F041638	Metagenome	159	N
F047462	Metagenome	149	Y
F051785	Metagenome	143	N
F083893	Metagenome / Metatranscriptome	112	Y
F085065	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100008511	F034044	GGA	MNKDDIILMADASGLSYYGMNKDREKFIYYLEAFAALVAEREREACAVICEAQGEYGDEQYADAIRARGTL
Ga0208974_100008512	F085065	GAGG	MTKQELLNLLKLISAIESAMSIHRATLPDYLFQEIDAAVVVLEREILNEQR
Ga0208974_100008515	F017592	GGAG	MYDDGDYGGIDEFMYWVTIIVLFLMTTVFLGAVAGFIWAML
Ga0208974_100008516	F032530	AGGAG	MSDTKEMVLLVSNLLVQQAIESRARKPESIWLAQSFEEAEANANLFAKTQLPISDPERKRNLIRAYDRVKLSRETYHV
Ga0208974_100008530	F047462	AGG	MGQVKTLLHTCTECGDDIDPRRVALGYRLCLWCGEEAATTERRGWTVVQEYTKGNYQFITPSSVAVTLKQTNPKEIRT
Ga0208974_100008546	F083893	GGAG	MMQTDVKSQHLTASGNIDGLNRNRFKALSYRGNGSDGYVRLRNGGSGGAILCELDVGTSDSFTIYVLLPGEGIVFSSGIYVDLSNVSACTVFYG
Ga0208974_10000855	F017442	N/A	MYKTRDYERKPTVLSENGNASTTTPSKRKKKPINFYDPFKRVDPKLLEQMYRAAQKEKLKQQPEALM
Ga0208974_100008565	F018002	N/A	MNLEAQFSSHEAVCAERYAQINARLKRLEGVIMKTAGVLIFSMSAIVYASLTFR
Ga0208974_10000857	F051785	AGGAG	MTRPIDYLEFYKTYIPPPPISTLEDAYVKHHRKYGDRFNAFYTQIPLWMKELFWYSFWKERNT
Ga0208974_100008571	F041638	AGGCGG	MAQKNVVAPRLPSPPQEYDPAYMNQLLSLLRLYFNQLDNAGPMAGSTQINGTTVVSGLSFFPTSGTDPSLPTDADFANLRIGDVYRDTQNGVMSNNQTLKIKTAI