Scaffold Ga0208974_1000078

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000078
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 42386
• Total Scaffold Genes: 81
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 66 (81.48%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000354	Metagenome / Metatranscriptome	1244	Y
F007524	Metagenome / Metatranscriptome	349	Y
F015332	Metagenome / Metatranscriptome	255	Y
F026201	Metagenome / Metatranscriptome	198	Y
F033309	Metagenome / Metatranscriptome	177	Y
F033642	Metagenome / Metatranscriptome	177	Y
F096603	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100007833	F015332	GGAG	MFTADQVWGLAVAADRINGGYFKEDVYVMENECQKRVTQANKLMVKQWLREGAFTEATAEDIEKGRAVRNYFNGFLLKQISGKINDFEQQALRIAQMDEFTGRNMLEFAIVSCLPGVMLRDQIRNELAREVRGSTQLQGAVGDKIQGEIEVVKCYYSKDYDKYRVTAKLVDSFVDFWYNSNLEAGTRLNIKAKIKSVRGDNTTQLNFVKRA
Ga0208974_100007849	F026201	AGGAG	MQNTKQYITETEDGYELCINVNEQCDNYTVESITMFISNVNEAEDGDEACYYDGDLAVNYNIDTLQNDETAQTMGTLLLRNVHSDDEVTVAMGHFYWDGAFTERLQEIIANAGFASASDITTSEWGMQDEGRASYDACELADEIRNIMQTTTA
Ga0208974_100007852	F007524	AGGA	MRKLSNTHALAINKLMLPLISTLAHIDDDNDINMYKMYADDIAHNVSALCVFNNTLDAEVLHDNIMRQDTCPREHFYTVLKYIEDNKLINTNMFACR
Ga0208974_100007855	F096603	GGAG	MDLIDFILGLALGGFIGFKVAEHIHVTMFRDILVKLKVSESDMRTMMQDLQKDLPEDDLPRVEVKVEMVNDQIYVYRLDTMEFLCQGATREAVMICLADRFRKDFTIVLSEEHGAQYLKESPTI
Ga0208974_100007862	F000354	AGGAG	MTKVNYDAFASFDINECCDHFDSEKQSNWKKINKFIVADGGEYAHIMETEFDFEDTGAGEYEAFQAGVKYALTKMNIAFEAAALDLQVCEVDLVESMGFVLVRADDEPEDFVKRVLKKPVMMVDSWI
Ga0208974_100007865	F033309	AGGA	MTTRQKALSFLYAGLVMLLGTMGGIETSPDLVTYDGVYLMVFALVGIAFMAVGASYAVEGARE
Ga0208974_100007869	F033642	AGG	LPDVVKPLLDDQGKPLPPDLALQKIEKLNIPWTDIHLYQPSNYAWPKVLADKLAIPVENHARRGACFQQIARQCAAAQATIAPDDVVIVMWTYISRLSLQWPARTAVPFCTIANPNWAWKTVILGFNKFFGLEPSKTSTKDAEDRIQQYIEKSTKETYLDPLGVYNQYYNNMVLQTMTDGFLRATGARVIHLSVEMDPVLGQLESARSQLDPTLREPYNIPDPAEWYRVPVDYDSCYVLLDPSIPPAENDMHPSVAHHANFAEHIHKLYFK