Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000074 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000074 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	43181
Total Scaffold Genes	64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	30 (46.88%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

43181

Total Scaffold Genes

64 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

30 (46.88%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001120	Metagenome / Metatranscriptome	772	Y
F001806	Metagenome / Metatranscriptome	631	Y
F003889	Metagenome	463	Y
F052555	Metagenome	142	Y
F067679	Metagenome / Metatranscriptome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100007430	F003889	AGGA	LGPEYAAIVLTAVISAITGGSWVANKLLSRQTERIQQGVEHINTQRRRIDNLEDEVKRLPMDYVLKVDFLHEITEMHSNFRQINNKLDKLIEKLLAK
Ga0208974_100007441	F067679	N/A	MAVPGRPEQAQTFLRRAADAYNSAMHSVGDLMPTKIKKGFQSGVELMAPESRREITDEQGNRILSSISNYSTLSPNFKKELKNVKGISFTETPQEFIGAYAARLLTDAGTDSTRHLYWRYNHPMAIADKLIEKAAGPAYKQFNPTQKGLVGLAISAPTVASLGHIDITNPLEQLRSKGFAQTYSEEGAEDRRETGQPGTEFLERFFLGRQGRPLKYETAKEDIPSLTPERYSNYMKNYYQDKGITGLGLIKGTMENLEGVPEARIVGFPIGLQAAGALAGGAMALRGALQTRPPVVTTKERRVISYPGGSSRVVEQDVNTRVPMATRKTASIALAGSLAGALVGNLTNQAIASLNNHPENLPSTNEYR
Ga0208974_100007446	F001806	N/A	MGAIVKEQSICTRMDAKTRLQRVEALETIKNKALEKAERGEDSLEVRDFVTSAKKELAYELPDEDAFRKAMNATLAYKAKKG
Ga0208974_100007458	F052555	N/A	MTTTTRRINEYTALAGIVKDLKAIVARESKRPQGCEDLTLSMLALLEEEIIPQLENEIEHDLDYDPTPQYLYDNTGGEPPVTMAKTHACAWQQHQEMHS
Ga0208974_100007461	F001120	AGG	MTKRSLISFDRTIHGVNITEHGIKSFTKSIKLGPLQLTLNANPNGVKGSFSIPGTGLSIPNIKLM

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000074

Overview

Ecosystem & Geography

Associated Families

Sequences