Scaffold Ga0208974

Basic Information
Taxon OID	3300027608 Open in IMG/M
Scaffold ID	Ga0208974_1000056 Open in IMG/M
Source Dataset Name	Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027608 Open in IMG/M

Scaffold ID

Ga0208974_1000056 Open in IMG/M

Source Dataset Name

Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	50486
Total Scaffold Genes	68 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	45 (66.18%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

50486

Total Scaffold Genes

68 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

45 (66.18%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location Name	Great Lakes, Michigan, USA
Coordinates	Lat. (^o)	44.504638	Long. (^o)	-83.045851	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Great Lakes, Michigan, USA

Coordinates

Lat. (^o)

44.504638

Long. (^o)

-83.045851

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007580	Metagenome / Metatranscriptome	348	Y
F010227	Metagenome / Metatranscriptome	306	Y
F010760	Metagenome / Metatranscriptome	299	Y
F068748	Metagenome / Metatranscriptome	124	Y
F096611	Metagenome / Metatranscriptome	104	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100005610	F068748	AGGAG	MITPDTLKELISYHAPTLTKLARDSGYKGPAFSSCKFLGITNGGQFCYQAVFLVKGGTDSTKLFLTHTGDRVNVDYHLTEVF
Ga0208974_100005611	F010760	AGGAG	MLDISKIVKTYNGKIGCMCGCLGKYSYTADGAENHGPGYNVQNSVNERSVKIIAKKVLANPNVRLEGNIAYVEDRVGNRMQAIYFKETV
Ga0208974_100005612	F010227	AGGAG	MQATTFNVSDKLTFAHTDTSEDSISTTYDCNVEVQLAGDSIWDCEIEAVTVTSIHIHENFDEDGDSSIHIAVCYNVDGDAEYEGSWRLYTDSGFSDAISTLLGTDVMFTEQGMQDDGYASMEL
Ga0208974_100005635	F007580	AGGA	MNRKFLELMSQYPRWIWYFLRDHLGQVSAHTLGWFSIILCHFAAIPTLLAVLFGQSDKLPPVDLMIFVWSALITMFFKALIEKNFLYISTICIGFCAQTVIMSLILFR
Ga0208974_100005636	F096611	AGG	MRAYEFIDEQRASLELCRSPKRLSRSMYSSCVSQGLRAHSSKGKGHTDGHGHYLKGKKSKSVQYGGDVKDYDGK
Ga0208974_10000564	F000652	GGAG	MKTAMVTTILRQEIQVPDDWEREHVLDFLGEYQSFRTAFQGVSNTDQTARILDLVVVEEEITELGEEAFDAWLGNRQNI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208974_1000056

Overview

Ecosystem & Geography

Associated Families

Sequences