Scaffold Ga0208974_1000037

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000037
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 58338
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (64.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003268	Metagenome / Metatranscriptome	496	Y
F035640	Metagenome	171	Y
F060632	Metagenome / Metatranscriptome	132	Y
F063400	Metagenome / Metatranscriptome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_10000371	F063400	N/A	LNRTQVEKLAKMADHFKEVEWFTLESNSSSGIGPMVSVKFNLFGDYDKDEDTTIDITDVSTW
Ga0208974_100003716	F060632	AGG	MTRITVPWKNQSNTWWNETCANILEHFGLPGDRYVTEITADHMHFDFSNDKDALMCRIMISDKI
Ga0208974_100003723	F003268	AGG	MSQSNIPSVLPTVERLLQRISVAEKSQQKEIRITIQEARDLTTELAIFSTKLGGTVQQIHAMLAQIKESSQNIDVKFDGGSF
Ga0208974_100003747	F035640	GGAG	MHYICIENNTVVALLNYLPSVPSTVSVQEITDSQAEQLRAQTHNFDVASRTIIAVAANVATQKAQELANGQEREFLNSTDWKIMRHIRQKALNIATSLTNAEYLELEQQRQAAAARIV