Scaffold Ga0208974_1000031

Overview

Basic Information

• Taxon OID: 3300027608
• Scaffold ID: Ga0208974_1000031
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 62884
• Total Scaffold Genes: 75
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (18.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.504638
  • Long. (^o): -83.045851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F058961	Metagenome / Metatranscriptome	134	Y
F074579	Metagenome	119	N
F085403	Metagenome / Metatranscriptome	111	N
F105074	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208974_100003111	F085403	N/A	MKAKKYNYGGKMSEESSEEIEIKSMDMASGMKQLQAAVKAAGKTPTHYKFKACFYDESED
Ga0208974_10000313	F074579	N/A	MIPLYHILVHIPSAVNDTIKVGESELYLDTKFNEFQHRTMKAKVVGIPAKFKSELEIGDYVFHHHHVALNDTQVVDPKEKIYRVNYDPFGGQGNQAYLIEKPDGSLIAVADWVFLEPFDIDADKEKSFIEIITLKEPEKRWGRIVYGSQWLEEEGLAVGDVVYFAKDADYEMDINGRKLWRMQIHHLICQKL
Ga0208974_100003144	F105074	N/A	VINNYNEIEISIPKPPSLNQLYAGKFWTFRHREKEKYFNGLTAALEGHDKWSTDRFAIHLRYNSKFDVDNSVVAVKFLADYLRYNGYVIDDTPKHFLELRITFDAQLKKDEYLAKIICYNYNLIQNNNDNDIRATKPSVLHSDLEDLSGERGTVRRPTRPKRKPSARPKTGKRDNK
Ga0208974_100003168	F058961	N/A	MTKVKEELLNAVKESQKNLQAIQMELGVIVLAELRKDALLKAYEEQQAKLKEATDAIQAEHGDGSVDIETREFTPAPVPEAEIVE