NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208974_1000004

Scaffold Ga0208974_1000004


Overview

Basic Information
Taxon OID3300027608 Open in IMG/M
Scaffold IDGa0208974_1000004 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER15MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)161208
Total Scaffold Genes220 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)93 (42.27%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales(Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.504638Long. (o)-83.045851Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001040Metagenome / Metatranscriptome795Y
F008051Metagenome340Y
F014118Metagenome / Metatranscriptome265Y
F017098Metagenome / Metatranscriptome242Y
F082395Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0208974_1000004139F008051N/AMIETLGWISTALVLAGYILNARQFSKLAMVAWIVGDIGWITYDFYIDNFSHLVLSSVIIAINLYGIWNLLSKKKTSN
Ga0208974_100000421F014118GAGMASVKKNSAFFQQGAVISKLSADARKPQELNAVVKAAMLQAERNRVYRAEQEAKAKLNPRFIR
Ga0208974_100000450F017098GAGMKNEEIFNQIIQNLDYSGKQYDIWDTMQPTDPDYMMHSPAPVGYNTTAEQRFLMQNLLIGFNGGSLLDIGCGRCDLYAVASELAALQGDIITYNAIDHNPIMTQLGEEKWGLTKINVGAFETAKFNPHEWVVASGVFTQRRCKTENEDLTKLFDDVDLLYNISTQVVSFNLLNPINTTHHEGFFYVHPGLMLDMLIEKYQYVTIRNNYSRDVYTVNIYKF
Ga0208974_10000048F082395N/AMKVRINQIECRFSQGRYEIVCWQPNSYYNKQEEYLADGWKRSFGFYCKNNTSISEQCFVNPESCYTVATMHYDADEGCCDMQTIGPRLLQLNCEHREDFFAVYELAEDRIPKQKTNTEDAEY
Ga0208974_100000496F001040N/AMASVVPFLLYKYLYKKNMAVERTKYSMEVIIRYDGRLIDVLDRIRAVRLVLMVHIEQDLGPDKERITLKIMTPYAPRETFFAIRKMCLGKIETLKDMTLQESTLTKLH
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