Scaffold Ga0209329_1024120

Overview

Basic Information

• Taxon OID: 3300027605
• Scaffold ID: Ga0209329_1024120
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1240
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000042	Metagenome / Metatranscriptome	3762	Y
F001851	Metagenome / Metatranscriptome	626	Y
F023459	Metagenome / Metatranscriptome	210	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209329_10241202	F000042	GGAGG	VTNMKNTKFVVKVNRGGTDITEYVERVDRTPIRTTPNRKLALLMGRFTAEDAVKSTQNSRCTSWLEPVQVSV
Ga0209329_10241203	F023459	AGGAG	MLVAEKAVGLSWVSVRDRLPFEGHECALICHNPKSNYLRRAIGWRLHGNWEIQDCALVNCDVRAWLKLPSTPSQYLTGSYGGGQK
Ga0209329_10241204	F001851	GGAG	MSAISISVGLLIALLAILVFYRVRKLPQIAAYGSQRMCPSCGLITSRLKACCLECGQSLTAVSVIPVIEK