Scaffold Ga0209329_1000126

Overview

Basic Information

• Taxon OID: 3300027605
• Scaffold ID: Ga0209329_1000126
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6877
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (90.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002396	Metagenome / Metatranscriptome	564	Y
F003157	Metagenome / Metatranscriptome	504	Y
F004392	Metagenome / Metatranscriptome	440	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209329_10001263	F003157	AGGAGG	MSDPDANQKRENTDLLGFARFGGLDRLDWLMILISVLLGTIAKQHHVLDLPDWFLEWVSPFLLMAFGYKARRKITEVVESRRDRGKDTREE
Ga0209329_10001264	F002396	GAGG	MRSLFPSTYDRADVLMSAGCSTFVSAALILVIPRVGIVLLEILLGLFFIGCALAARARLRIQARSQVKEGPGSSTNAKAKWFDRYDVLMILTVIVIYSSMSGLLRHAGLSEGTVGILPLILFAAGILLKPRAVQFIERRRKNRKAETHDGRSRVDAGEKQEIARKDTVERCQ
Ga0209329_10001265	F004392	AGGA	MPVNGPETIADSKPSQPVASEGRSVRATRDTKPAVGRGAATRRRRDRQESSQTNGEERFFLASANRNGDVPTLGRECATEAEAIIEAFREKVNLYRVTEFQTRAEIGRSGEPILRKETLKKNNPAS