NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208324_1089074

Scaffold Ga0208324_1089074


Overview

Basic Information
Taxon OID3300027604 Open in IMG/M
Scaffold IDGa0208324_1089074 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)869
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location
Location NameGermany: Weissenstadt
CoordinatesLat. (o)50.1318Long. (o)11.881Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025793Metagenome / Metatranscriptome200Y
F027915Metagenome / Metatranscriptome193Y

Sequences

Protein IDFamilyRBSSequence
Ga0208324_10890741F025793GGAGMSTITEKTNRLFAAATHSDETLGYPDDVEFVPADEEWAEDVLWRNLIEGQATVLVSEETELLLIPLRRGLIDRLRGRVPVNVAQRAHGHATPYATASR
Ga0208324_10890742F027915GGAGMVIERSSAHPVEYAIMLLIERDAEWHTLRTFDNAHAPEEHHEHRYVGSEKQEPIVTYGPVNDAMHDAELKLLRDWRDIVHEWENMR

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