Scaffold Ga0208324_1001308

Overview

Basic Information

• Taxon OID: 3300027604
• Scaffold ID: Ga0208324_1001308
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9749
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (89.47%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017965	Metagenome / Metatranscriptome	237	Y
F029198	Metagenome	189	Y
F046588	Metagenome / Metatranscriptome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208324_100130813	F017965	GAG	MIDLTDMSENIGHRDALYLFACHLEWHTRRNLAAYQDLLAALDDHDCDTRLLAESLLHRSWPRPERTATFVESW
Ga0208324_100130815	F029198	AGGAG	MDSENNSKAVRVAGEVMVLHCWACGSAHCVNLELCVPGELSHMVCSNSNCGMSMFLVNELVVDDKTRKQMTKSEVNAHVTYSRFWK
Ga0208324_10013086	F046588	GGAGG	MTFIPTQTGFMRLEDSEKLLRAIFPNYPSLEPCHSAPRLEPIPQGSKEYVNEERMSLC