Scaffold Ga0208324_1000032

Overview

Basic Information

• Taxon OID: 3300027604
• Scaffold ID: Ga0208324_1000032
• Source Dataset Name: Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 105375
• Total Scaffold Genes: 86
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 65 (75.58%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil → Peatlands Soil Microbial Communities From Germany And Austria, That Are Sulfate Reducing

Source Dataset Sampling Location

• Location Name: Germany: Weissenstadt
• Coordinates
  • Lat. (^o): 50.1318
  • Long. (^o): 11.881

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000477	Metagenome / Metatranscriptome	1097	Y
F011955	Metagenome / Metatranscriptome	285	Y
F043510	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208324_100003222	F043510	GAGG	MSESREIRLPEDLCVAAEQRFGSEFRALDDLLIFLLQELLRRDTIDIDRADQRVVEERLRDLGYI
Ga0208324_100003234	F011955	AGGA	MTMTAARAISPPTLPHAELAPILEDDIADLASFIAAQSGRSVEAVEAHLHWFLLENPALQPQHPLGFGLRSSGQFVGCILCSPQAFRLENKNILMMGSSSFYVDTRHRGHGGRIFLQYSRLGSRWPLFGTSANAEAAALWKAAGASPIPHSEAELFGILHWPPVVEEFAHRRNVHPMFHHLAGSPISRLAGMLRRLKIDRRDSEALQLLTSAEQVNDLVCHFHSAKLTALREPSYIRWRYFSGSDATAAVFAFRSRKPDREILVAVNQRTRGYRGQINTLNVLDVYPEIPLEEWLRMIGALIARYGKAVEAVVLRSQDLQRQKMFCELGFQHRAFDAPNGWFLDKASLLPACDWYPVPADGDGLI
Ga0208324_100003267	F000477	GAGG	MPARTKKFTPEIDAKLYKEFVAVAKRNGQSQRYVLEEALKFYLKNVVPSQHLVRREVMEAFEQSVSANRDLLERLAK