Scaffold Ga0209331_1047827

Overview

Basic Information

• Taxon OID: 3300027603
• Scaffold ID: Ga0209331_1047827
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1084
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F030676	Metagenome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209331_10478272	F030676	N/A	MALAILSVIAFLALIVWRFVFNGQLRRPVVREIGVPRRQDNSLLEQGLHILDLAGVAVIPDNRFENGSNGAHPITPKERAQTYLRRVVALTGATLMGRGYVLDVGTTRFEVRDRYVRRLRDLTDPKCAYEETCFYSADKSMPKAKQIATALLQLRNNPALFDRWAAQNGAFKADGQAFRPRAVIHFR
Ga0209331_10478273	F000217	N/A	VTFSSHGDTTLLEYDPATADMEEVNKVIAEYERKTGAQPFDMATGERIEKVTRQQNEVLMVQPIAGG