Scaffold Ga0255079_1004754

Overview

Basic Information

• Taxon OID: 3300027601
• Scaffold ID: Ga0255079_1004754
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3480
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (81.82%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002794	Metagenome / Metatranscriptome	529	Y
F066714	Metagenome / Metatranscriptome	126	Y
F083894	Metagenome / Metatranscriptome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255079_100475411	F066714	N/A	LNAVSFIDVVVANANTLGVECILDYFPTPYGRAWRCDRQTWKKYSKPTIGGAPGGDWYHIEITPQAADSVIFVKAAFLKVFGEIPPKP
Ga0255079_10047543	F083894	AGGA	MSAFDEKQTGATPIEIVEYLRGVIDTLRAEKALLEKRYKDLEASRETWQKLAAAWEWLADNKRIVPADED
Ga0255079_10047548	F002794	GGAG	MSEGSAWNQGELTEETRKLVLERTEMVNHTMAMFGLIDEIMNVSKNPHASIIQRLRVMKNSLSLEDPMPLYDVTTLDLAIKALQAHS