Scaffold Ga0209786_1017473

Overview

Basic Information

• Taxon OID: 3300027599
• Scaffold ID: Ga0209786_1017473
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius ilvae ELBA.2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2451
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Cnidaria → Anthozoa → Octocorallia → Malacalcyonacea → Xeniidae → Xenia → unclassified Xenia → Xenia sp. Carnegie-2017 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011565	Metagenome	289	Y
F023283	Metagenome	210	Y
F088370	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209786_10174733	F088370	N/A	MALPDESLVKDVWYAMWEVQMHARHEKVPGPCRDFGKLANSCFEHWFTKPDALHLYAEMVLADPFDPQETTRQLQRLHSCYATDTAQACIRLISLLEKACSK
Ga0209786_10174734	F023283	GGCGG	MMIGGAVVNALAFTGGNYMFSMLGRSDEAEKERKRHDLAIEELQRAEREYHHKRQLRLDYLNQQLRVEQHSSQVFEDVDAAAREYWLVTAGDEKKLDQVPDAGAKPMFNENYESSASQKEYELMFMAGGLALTGWAAFKFL
Ga0209786_10174735	F011565	N/A	CNNTSAPKDLGNLLYHSPVIGGLSIGYTMIGKKLFKMKPADLGRLDLEDSTKLVGTVALSLWTQDMLVKQGIIPANIIRTT