Scaffold Ga0255088_1007568

Overview

Basic Information

• Taxon OID: 3300027597
• Scaffold ID: Ga0255088_1007568
• Source Dataset Name: Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Miss_RepB_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2983
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022636	Metagenome / Metatranscriptome	213	N
F041152	Metagenome / Metatranscriptome	160	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255088_10075684	F022636	N/A	MSTYRRATLQDLAKIGYVPNTQKYSEHIAFAKKYYPPEATTMVMVVHSEYNDSTYDNSFQYIIVYDKDGNELPPLKKTAKECRENWNIDNLPIPNTSHGHYGASESDEPLDDVVIPLTIDVPEFYIKEN
Ga0255088_10075687	F041152	GAG	MNIVDYIVKNWDTLPKSKFDDDRIVIFKEIENWDGGYGHHSYEGVGVDKDGNVTWCYSSGCSCSGGPSLETKKDLKVFVVNEGIDLN