NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255118_1029780

Scaffold Ga0255118_1029780


Overview

Basic Information
Taxon OID3300027593 Open in IMG/M
Scaffold IDGa0255118_1029780 Open in IMG/M
Source Dataset NameFreshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)980
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: New York
CoordinatesLat. (o)45.0061Long. (o)-74.7949Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002406Metagenome562Y
F010618Metagenome301N
F019834Metagenome227N

Sequences

Protein IDFamilyRBSSequence
Ga0255118_10297802F010618AGGAGMTLKELILKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVVHPALDTHSGYICRIVLCGEIEGED
Ga0255118_10297803F002406GGAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDEE
Ga0255118_10297804F019834GAGGMKELKFTITGTIFVPDNVEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHNIGFFEYEDAYFEDXKIYLY

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