Scaffold Ga0255118_1029780

Overview

Basic Information

• Taxon OID: 3300027593
• Scaffold ID: Ga0255118_1029780
• Source Dataset Name: Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepB_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 980
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: New York
• Coordinates
  • Lat. (^o): 45.0061
  • Long. (^o): -74.7949
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002406	Metagenome	562	Y
F010618	Metagenome	301	N
F019834	Metagenome	227	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255118_10297802	F010618	AGGAG	MTLKELILKLQELDKKYEQYSQDTEVVLAIHSKNEFNPEVNLDYIDEVVHPALDTHSGYICRIVLCGEIEGED
Ga0255118_10297803	F002406	GGA	MSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDEE
Ga0255118_10297804	F019834	GAGG	MKELKFTITGTIFVPDNVEYEYNFENQIYSFKINDKTYSLIAGLEADEKEIIVTDENFKSHNIGFFEYEDAYFEDXKIYLY