Scaffold Ga0209733_1000059

Overview

Basic Information

• Taxon OID: 3300027591
• Scaffold ID: Ga0209733_1000059
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13538
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002552	Metagenome / Metatranscriptome	549	Y
F003165	Metagenome / Metatranscriptome	504	Y
F071509	Metagenome / Metatranscriptome	122	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209733_100005914	F071509	GGAGG	VLVPRCRYRLKEFVVNLFRHYGLGFHAGEWRALAIVISLALVPGIALLKLVIWLLTPEPDKDESERDYWRTHGA
Ga0209733_100005918	F003165	GAGG	MAKVIEFYVPKNFRKPLKCAPPLHCGKIIEFCPPTKKSA
Ga0209733_100005920	F002552	AGGAGG	MDGNYVFLCGVMWCRFGQQDAGKELLRATNSVDPDLKALAWAMLAKGARRLKDLERRTPTGSRAILEGNLCG