Scaffold Ga0209733_1000001

Overview

Basic Information

• Taxon OID: 3300027591
• Scaffold ID: Ga0209733_1000001
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30008
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001742	Metagenome / Metatranscriptome	643	Y
F002102	Metagenome / Metatranscriptome	593	Y
F002560	Metagenome / Metatranscriptome	548	Y
F049109	Metagenome / Metatranscriptome	147	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209733_100000110	F001742	GAGG	MPDTETGNRGWDRQKIPRIGPEEAARVFAQCEHLLDSSPVFVENLRQVGFARFMAPLHEDILKLAVQPDSWGERTRARLIAELFAGLKGIPAEDARVEEIVQFSNVVVPCFLLELGRRRQHIEIEFPANPCDSAARFALRAGPSYPVHSVNSEQLVRLVAEAGEELVGLCYFGDQRSRETIEAQLALKDSTTDS
Ga0209733_100000115	F049109	AGG	MENKPSNAEQALPSEQAAAKAAILAECERLAGAGITFVAVHFDGSGDEGASEDIKCYATE
Ga0209733_100000124	F002560	AGGAGG	MVEHDPPPPAGHTRPLVIPLPIALYVSGELIFELYDGGQSSRRFSIRWERLVPTKENEPEAESPQTVLRTRQD
Ga0209733_10000013	F002102	AGGAG	MSKDEKENRSKPESGALDKFEPGGELGPLDDRNEYEQRLHSLPMGQKELAQESTRFADLCQYFSQQKMDIPPSIVERLGNVSKLPGPDRIRAMKDINPELMEYLNDVGQDPGIRQ