Scaffold Ga0209220

Basic Information
Taxon OID	3300027587 Open in IMG/M
Scaffold ID	Ga0209220_1008497 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300027587 Open in IMG/M

Scaffold ID

Ga0209220_1008497 Open in IMG/M

Source Dataset Name

Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	2741
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

2741

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

4 (80.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location Name	Thunder Bay, Ontario, Canada
Coordinates	Lat. (^o)	49.08	Long. (^o)	-89.38	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Thunder Bay, Ontario, Canada

Coordinates

Lat. (^o)

49.08

Long. (^o)

-89.38

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F004003	Metagenome	457	Y
F004186	Metagenome	449	Y
F004349	Metagenome / Metatranscriptome	442	Y
F006952	Metagenome	361	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209220_10084972	F004186	AGGTGG	VNTPRALVLLAAAVLTAGCGIPTPAAPPSAKEVLAKPQQSNLKDGHFIVTGKITNNGVTVQLIGDGALVYKPKPAGRFKFQTTISGQTLTVEEISLNGTNYGLTPASNKWVAQQSSSGIDPNAFAGASNQKYVGEETLPQGKAWHASAKDKDGNAFDAWIRESDGYPIKYVETQTGGQNITLSFDKYNTGEIIMAPAANQIQ
Ga0209220_10084973	F004003	N/A	MSSRSVTTVLRFVTAIAAGVLLAGCGGPGSPLGPPSPQNILAKPVHTSSLKDAHFLVSGKFTDNGKTVALAGDGALVYTSGSGRFKFQTTVAGQQVSFEDISVNGTDYSMTIPGSGKWVARASTSGLGPNSFAGASNFKYVGEETLPQGKAWHASAKDKDGNPFDAWIRESDGYPLKYVITQQGNTLTLTFDKYNTGQAIAPPPASQVVKG
Ga0209220_10084974	F004349	AGCAGG	MGDVKAKPRATLAVTVLMLAACGPTANGAAKLPTASEILNKPDQANVKDAHFTLVAHIVSASVAFDATGDGVIVVKPAQASKFTMTTTIAGQSLKFEEIIIGGKEYDLAPDNPRWTVKASTSSNPSSFKGTDAAYLGEDTLTLGKAWHVKAKDASGSPFEAWVRKSDGYPLKYASTTQGSTFTATFDQFNTGQTVTAPPASDVQS
Ga0209220_10084975	F006952	GGAGG	VIGPLGTANHEIREAERRDLERRRALLAEPRRLTDELLGQLEELNLDGVQVVPISYDPGLAAIRSHLVGWPGIGTRLLERLQSGTRTAELIETVFTIQEVIAPPTLPAGTVIFEEPDLV

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209220_1008497

Overview

Ecosystem & Geography

Associated Families

Sequences