Scaffold Ga0209220_1001723

Overview

Basic Information

• Taxon OID: 3300027587
• Scaffold ID: Ga0209220_1001723
• Source Dataset Name: Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6025
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (55.56%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Thunder Bay, Ontario, Canada
• Coordinates
  • Lat. (^o): 49.08
  • Long. (^o): -89.38

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000552	Metagenome / Metatranscriptome	1033	Y
F003099	Metagenome / Metatranscriptome	507	Y
F013281	Metagenome / Metatranscriptome	272	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209220_10017232	F003099	GAGG	VTLTLILFCGFVAILLLGLGWALWEPRERRKLRADPRSLEEHGQRHVTYLPQIRQALAKTDYEFLSKRASREVQRGVRHARRRVALAYLAALRGDFQSLLRMAKVIAALSPEVAAVHEFERLRLTAKFAWQYEMIRWKLLAGFAAVPQLDGLSDLISGLSVRMEAAMKELGERAAAAAELASSINRRGLDVA
Ga0209220_10017233	F013281	N/A	MMWAVNAATGVLVLVLLLVRKNFRAYPAFTFYIFVNLAQTILLFITYRRWGFFSRSSWLFAWGTQIVVACSRALAVAEACGHLLSRYPGIWALARRLLVGCAGLVLLYSGLAARHQWELALPSADRGLELSIAAVIVLTFLFVRYYNVRIERTDRSLAIGLCLYSCFRALNDTILERYLYGYATLWSVLGLLAFFASLCLWSWALRKSRTATAAEENLFPLDVYQSFTPQINLRLRSLNDQLCKIWKPEVPRQ
Ga0209220_10017237	F000552	GAGG	MEPIRRKLVSIEEQRFWGWGCSECEWVFRPLGPLVGQSIEEMKVHYEKQRDEEFESHACAKYPRATKNPR