Scaffold Ga0208966_1044843

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1044843
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006843	Metagenome	363	Y
F019829	Metagenome	227	Y
F072334	Metagenome	121	N
F082693	Metagenome	113	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10448431	F006843	AGTAG	MAFNLDNYVDVPTRLAEALKRWPDLRIQETDNQVITMPDGSTFIRCTVTVWRDIADPIPVIASAAEPFPGNTP
Ga0208966_10448432	F072334	N/A	MTEKVDTPNTQLQKVTLLVAMHDYADDQLNAGEWLQNVIMGCAEQKPTAYYGAKEYVKVMQVLSVENCEVVVSNGL
Ga0208966_10448433	F082693	GGA	MAQIDERVTICLTSQDRAEINYLYRELETQTKYLQARDTFTHTYTPKASFTGLVAEYAFSKWFGYDYVIKPYDPTNDDVLGYQIKATERYDGCLIKQPHNPNGIYILGIVLNDYSEVSFRGWKDSSEIQRACYWRADVPKPGYFVPQAALWPLSDLPETIELQTHRTTGLW
Ga0208966_10448434	F019829	N/A	TEYPIPDTGLTESTRQMYSDKYAETFKSFVDEILKPVITPIVKSVDHSILLDELAILREKYLSGTPSDEHKFAGAVITAAMAVIIGI