Scaffold Ga0208966_1014823

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1014823
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2311
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006463	Metagenome / Metatranscriptome	372	N
F009004	Metagenome / Metatranscriptome	324	Y
F009958	Metagenome / Metatranscriptome	310	Y
F034772	Metagenome / Metatranscriptome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10148234	F006463	N/A	MTSGTIYDQLDWWQRQWRGSFDLGLYLEICRIKKNENQIQKPMKRFKATFKTWAYVGAPMKLETRIVEAYDTQHVKNLIQKNDDIIIEIKQIEK
Ga0208966_10148235	F009958	N/A	MENRILEIHNREWILNYEFLGWQYQIFGTWEFKDYDEVSEFAFIELDVEGSEKWIIETDDHLQPHIINIRILEDVRLEMQEAINSDLQHYNFWEWKTSNDESNYNFYHEL
Ga0208966_10148236	F034772	N/A	MKNLINYFTPTTEEHKLFLKHFLSTLTMFIVLGGMFYCLMYLKSL
Ga0208966_10148237	F009004	N/A	MKTEFSKVIDILELQQKEDKQNTNQLHLIIQTLATFLNDEQLQEVENLFNQFKK