Scaffold Ga0208966_1011745

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1011745
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2603
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (14.29%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026552	Metagenome	197	N
F049433	Metagenome	146	N
F086640	Metagenome / Metatranscriptome	110	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10117452	F086640	N/A	MKKFILLEEEKLEIKSMYGLTEAPIPVRQTTVMDTLAVPSNKLLFQNSTNNNNIIFLSVRDDAGKVIPNTTYKYKIGGSYSFFDFNVNIRNLKRDDKGNLTGEALPSNSMAASAMRSLIPKQNLTKDGWLMIKIPNQKLTEGIQSLKSTKGQTADIDAGQGINVTLQYIGK
Ga0208966_10117453	F049433	N/A	MKKFIITEEEKTRILGMHQEYGYNSLNESPSGVGFGPEMNGLKIQKSEQNEQDVEQINEPKIINAVNTVLKKLMMSPKFSTDETLFSLIEKGDLIKAYRLHRNLNDAVNYVDYELLDDMLNNPETKDSIVKLLPNVKNLLINFFS
Ga0208966_10117455	F026552	N/A	MELTNVIEKLLNRDSFLNLLENDIIEKFEVSVSPFESKILIIKMFLNITKDEFLGTGESTPRLSEWEVRGKLWEDYNLDPAWWHAYIIPNKILKPLVGKDYFIKILLFVVDKNGIHLFTE