Scaffold Ga0208966_1011547

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1011547
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2625
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006658	Metagenome / Metatranscriptome	367	Y
F012341	Metagenome / Metatranscriptome	281	Y
F058143	Metagenome / Metatranscriptome	135	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10115471	F012341	N/A	MTLSMDELFDMVTKTIAEPHTTITDQHKHRAIRVFIAFEEFLLDNVLEYWGDTAFGEIDFGGYAAGVLDELEGK
Ga0208966_10115474	F058143	GGA	MIVERTADLQILTDDKQTYYRISYNDEFQYVSWFRREYSILYPVDAALYDTLTQKHFEVS
Ga0208966_10115479	F006658	AGGAG	MLLFADILRQKQNFWNSKNNTRIITMTEPFGFNEVSTGELIDSPKFQEEQSKKNTLLESLNSPEMVKMREDLAKAHKDSIDNSVGWYYNLSAEDKYKAVEAFCYIICKAEREGTSHRGLMSELGVYPEGFWIDDLMTLHNALYVEYQEQDSRNWKDTDTLKELLD