NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1011547

Scaffold Ga0208966_1011547


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1011547 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2625
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006658Metagenome / Metatranscriptome367Y
F012341Metagenome / Metatranscriptome281Y
F058143Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_10115471F012341N/AMTLSMDELFDMVTKTIAEPHTTITDQHKHRAIRVFIAFEEFLLDNVLEYWGDTAFGEIDFGGYAAGVLDELEGK
Ga0208966_10115474F058143GGAMIVERTADLQILTDDKQTYYRISYNDEFQYVSWFRREYSILYPVDAALYDTLTQKHFEVS
Ga0208966_10115479F006658AGGAGMLLFADILRQKQNFWNSKNNTRIITMTEPFGFNEVSTGELIDSPKFQEEQSKKNTLLESLNSPEMVKMREDLAKAHKDSIDNSVGWYYNLSAEDKYKAVEAFCYIICKAEREGTSHRGLMSELGVYPEGFWIDDLMTLHNALYVEYQEQDSRNWKDTDTLKELLD

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