Scaffold Ga0208966_1005734

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1005734
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3735
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019450	Metagenome / Metatranscriptome	229	Y
F036596	Metagenome / Metatranscriptome	169	Y
F037622	Metagenome	167	N
F086384	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10057341	F086384	AGG	MEESIVEKGKNGRDIFTPELANEIVAACGSGFTLEKAGALVGVNPSTIRTWAQRKPDFGKRVETARKKHELSLLRDVQLAGEKSWQAKAWILERGYNWAQPSARLNVTQEHTHGISSNLASLLAGIAIRKKSQSEKIANPQNDSLDIESKQLSNIESNHKSHTNILYQLPRVVDAQHLKDKTLPRVKHKRMRLRKPRKSSLPTTTTPATPPATI
Ga0208966_100573410	F037622	AGGAG	MDKNQIIKEYFASIGRKGGSVTGITKARKMSREHYQMVAQRQRERWQKWRLENGRTEVKRKRSRIKDAK
Ga0208966_10057343	F036596	AGG	MNKTKTFKIGESCIGGIIQIKVSEGTYFPQGTTIKVLVKEWKSGAVIHSNIFGRIHESRLVNHLHDMTTSYHAETIMEWIKENAWQHNVLVTMEGRN
Ga0208966_10057345	F019450	AGGAGG	MESTRHYFAVYNSRGQFFARFLSYAAALRWAVRNGMEWSAEIKKERDIQTK