Scaffold Ga0208966_1005247

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1005247
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3918
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002214	Metagenome	582	Y
F004430	Metagenome / Metatranscriptome	438	Y
F005344	Metagenome	403	Y
F032154	Metagenome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10052471	F005344	N/A	LTWATYDPTVTWANAENTGLGEIDTPGNYELAQRASSRTVIYDLVAALATSGLGYIYEDANGLIGYADSTHRTAYLAANGYTDLTANHALGRGITIKTKAGDVRNDVTIQYDTNSSSEVSDRDEASIGLYGELAQIITTTIKHQADAEDQAAFYLALRAYPQPNFDSISYALTNPELDNGDRDSLINVFMGQPIALNDLPLNMSAGTFQGFVEGFTFRASFNELSVTLLMSPLAYSLQAMRWSDVPPSETWASVSQILTWEYATIVS
Ga0208966_10052473	F004430	AGG	MANIGDVLTMLIPNGGYIASGDDYEGIQFLECDPITKAQFTAGFAKWDSWKAEQDLKAATDKAALLAKLGITADEAALLLK
Ga0208966_10052476	F002214	AGGA	MGPVSLNVHNETKYDLKIQASNGATAGAVAGASTSLGFGPGDTNITCAMRWYQDGICILQGSVAWSAGGSGADDGWTTSNIICMSGSMNGEGFSGCNEGWVEMQPYNLMANGGDVEVTYTNA
Ga0208966_10052478	F032154	N/A	MSAKVVCAGVRRPVEAAGLAMGDFEMINLSTGDRLRIDKDGTELRDEVSPPAIEWCDRGQHYAAKLGGRDEGGILWVCLECGRK