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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027586 Open in IMG/M |
| Scaffold ID | Ga0208966_1004211 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4378 |
| Total Scaffold Genes | 9 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (55.56%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001561 | Metagenome / Metatranscriptome | 670 | Y |
| F008552 | Metagenome | 331 | Y |
| F009750 | Metagenome | 313 | Y |
| F011760 | Metagenome | 287 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208966_10042113 | F008552 | N/A | MSVMIISFEASANVDSTLFGYFSMEYDPEFFSDIKENLTDIPKSKPLAFKLDTDNVKLLQGAFHNIRRIICIPDIEKQKFTYVFKRNFEKGTAKKFKYTKLHIDKDYFYFTGHHENADGTKPVEFQSLNFDARFIDTIQNQYIKHQENMVN |
| Ga0208966_10042115 | F001561 | GGAG | MQTREQKLVYLKKTIETLWHGVSDTKEGDYPRIISLYKEVLMHDYHDADSWENMIWLMWSMAVNNKDTVWLFQAEKFAKRYLSLNSNGYRAYEYLGQFYRIMYVDLRLAFRYYESAIRWKDAPLSTHHSLISVCEKSGDKVRAIGYCKMTLARFPNDPYTKSKLEVLTKL |
| Ga0208966_10042116 | F009750 | GAG | MILKNAIFEPSHTMKEIVTAIYQNGVFKDNKILKPHLTDRIGIRMKFPEGAECILWTNGKKYYAVCEAFGTIFTINIPRNIGDDIWYRFKTEFEGNYSYNSF |
| Ga0208966_10042119 | F011760 | N/A | MENTIVQRMVMRVRLDDVSDRSSCIGYVGQGTWFDGKSFIVTQYKANPSSFYFFVYNDFVPDYNYFNSMNSGFGNEIYQLNPDNGNFSGKTYIYSSKLDKMFEPYAITPVVESPTFLFEI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |