Scaffold Ga0208966_1003408

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1003408
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4883
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (35.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010913	Metagenome / Metatranscriptome	297	N
F011298	Metagenome / Metatranscriptome	292	Y
F012669	Metagenome / Metatranscriptome	278	Y
F088881	Metagenome / Metatranscriptome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100340811	F010913	AGGA	MNMINKFFKSVFGKCDNNECYDRILLKAVLDSNKNQIERYNNIMSALTNLQEALNRLTTATDTAVTVLNTPHPSEEAIQAAADLVNAQATRLESASDSDPATIA
Ga0208966_100340812	F011298	N/A	MAHFVKLSVLDPGHDDVENQNNRKYNSQLINLDMVINVEQSVVHCLIFTKNNSTHPIRVKESLDEILYLSHGCNKVLKG
Ga0208966_100340813	F088881	AGGA	MSATINYNVDSIQCYTTYDQYTDVVVKVGWSCIGSGIAEAGPQSGSTVSLSYPNTTPLTLNSGSWDSGSFVPFNQLTNQVIMGWVFGQIGESGKDIIDNYVTEQVQQMINPTIVNLPLPWLPTGSIQP
Ga0208966_10034082	F012669	N/A	MSEQTYMNIKDAVKRPVFDAETINRENPRFKRLVDSYQKWNQDDYFTEHRSTYENDIIECLKEYDLDGFALAQHLSEYKYIEPDSELVHILEDVTFVKSSLETEMLNQWVKENFLTIPDDVVGKKVNVKQGIRKYENHYITGIKSETYQVTVSDKIDKNGGYIVGFENVTFL