Scaffold Ga0208966_1001578

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1001578
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7124
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Nostocales → Aphanizomenonaceae → Aphanizomenon → Aphanizomenon flos-aquae → Aphanizomenon flos-aquae WA102 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F002406	Metagenome	562	Y
F009266	Metagenome / Metatranscriptome	320	Y
F010618	Metagenome	301	N
F060914	Metagenome	132	N
F101144	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100157811	F002406	GAG	MENIKWIQAMSDRLRDTLSSEYDDETKDLIIRAFMRGLYQDPSIVEELKSSSLIESDYFEDAE
Ga0208966_100157812	F010618	N/A	GVGLKNGKCFSRRVKKLTLKELILKLQELDKKYEQYSKDTEVVLAIHSKNEFNPEVNLDYIDEVLHPALDTFSGYICRIVLCGEFEQED
Ga0208966_10015785	F101144	N/A	MIVKTFTYYITERHGYVETTRAYLRKLKISKLISPYSKQSRSKVYIEEDGDLKIFVKRHTIAEIAITLKEEEKEQIFFDNMWNFKDDECQDKQFDAFKSEWSLSQKVFFVKPESIKHLRNSTFETKDGKCLKIVPTFFLDGKVLNETQLKKLGIELTNIKTNELDYENEF
Ga0208966_10015786	F009266	GAG	MTAKEIKILDNEIQYLCEQQDRVKAIREYTNINPKFTFLREAETIESLYKSVLENRKQDKSTYFCCATSGWHVVYLRDKKTYKKGEKFSIKIYHTFVLADNLD
Ga0208966_10015787	F002398	AGGA	MIPLMLFTLINLNPINNFVSLKTYISENAKIHCQVYWIYEDIPNFPRLNSIEKNKFDFFAYLDTIGIEHTQVGSYYFFRLRSQK
Ga0208966_10015788	F060914	N/A	VQQRDTQLKRLIKVRSDISASIYPIQLYQVDDYFTAEENGIELFRFKSQHLCSIKAKELIRRRKNEKNARIIQDINELKVQGIL