Scaffold Ga0208966_1000819

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000819
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9761
• Total Scaffold Genes: 21
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (23.81%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Spirochaetes → unclassified Spirochaetota → Spirochaetota bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023790	Metagenome	208	N
F038237	Metagenome	166	Y
F082667	Metagenome	113	N
F085697	Metagenome / Metatranscriptome	111	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100081915	F085697	N/A	MSVELKITIQEVLDLREALIHLERRIKQLIALEHKDWHRLYDLDIQSVEKGKQILKQIIQRD
Ga0208966_100081920	F023790	N/A	MKMISQTRRFEVQSTFEDNKVLYVVTTRGELFPDNTQSKAITFDFKRLDKKKLTKKEEKFGDDVFNHIIKDKHGSNKL
Ga0208966_10008195	F038237	N/A	MINIEQVKAGSIATILMQGEYKMNKGGSNGIPLNQYSGRVTRAYRFAITLAGEETYFNKYPDAIGKPMWFEFVRDGLVKHKKTGELYVAGLPTKSKRNKFDLLVDGRPITSQERKDIEQYRTDKEEAKFLTIAIDNCINVESFEMYGVE
Ga0208966_10008196	F082667	N/A	MYQTTPAQSKTETALAKKGFRFSSWLPFSPDANNQPSEGTESLGTIVMVKRATRFSTEYREIEPDGSIN