NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208966_1000396

Scaffold Ga0208966_1000396


Overview

Basic Information
Taxon OID3300027586 Open in IMG/M
Scaffold IDGa0208966_1000396 Open in IMG/M
Source Dataset NameFreshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14009
Total Scaffold Genes49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (61.22%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location
Location NameGreat Lakes, Michigan, USA
CoordinatesLat. (o)44.701094Long. (o)-82.854085Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014135Metagenome / Metatranscriptome265Y
F022413Metagenome / Metatranscriptome214N
F029748Metagenome187N
F036228Metagenome / Metatranscriptome170N
F043920Metagenome / Metatranscriptome155N
F043921Metagenome / Metatranscriptome155N

Sequences

Protein IDFamilyRBSSequence
Ga0208966_100039616F036228AGGMSKGSTPRPFSVSQEEFANSFDKIFRKNIEAGEEIHSDKGYELGTKEGYEEFAKKRQEAALDEMVRISEEMGLYDDEFDAIHKYNQETQEVKFRQLKK
Ga0208966_100039628F043921AGGMKSLFIMGVLAVLTGCGTVGGAMQGAGEDLNQAGQYIKKVGK
Ga0208966_100039631F029748GGAMMKFLFGCAFGIFLVTAGTSGIAMLIDTTVSKFQNTIKESVREQQPRQNNQTLKHMESL
Ga0208966_100039636F043920GAGGMRGSVIMLVSFLIVFGAVGGIEMNPDADLLTLMMVAIGGLIGMLIGVSVMREDA
Ga0208966_100039641F022413AGGAMLLAKPKLTNSLDSKQFKTFAECQEYLESYTDTSMPLVEWIAIGKILVAETMTTPEFYPKKVKGQIVMAKFDIEEFM
Ga0208966_100039646F014135GGAGMSNGITIDFDTADRITLLVLKDQLKYLRKELEDYKEGKWLHPEDVVRNAEIIAALELLIPYYGGTV
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