Scaffold Ga0208966_1000340

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000340
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14977
• Total Scaffold Genes: 22
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016968	Metagenome / Metatranscriptome	243	Y
F048988	Metagenome	147	N
F067730	Metagenome	125	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_100034010	F016968	N/A	VKITNPPKALIALVGLVCLTVLMALNSIEEATGTGLIGSILGYAIGNGVAARQGQPVSPIIGRKPDGE
Ga0208966_100034014	F067730	GAGG	MSVAISTEIAGIKEAVASLNKIEPGLRKQFAAELNQIAAPALNVAKSRYGSLGLPLPGMGYVWSQGGRKLFPYSAAKAQSGVKVRLDTKRNTVGVIVISQMNQAAAIYETAGRTNPSRFATNLGRTPRPGRTRLFGPAVYSMIGQVSREIEQAALRVFRQVNRELR
Ga0208966_10003409	F048988	N/A	MANRPYPYYPAWDGKQTSAGITELVKLCAARWATKNLGTYVNRNMNNNAVPPLKSTHATGNAFDCQYKDEKQAFLIWQFLLANSKTLGISLVNWYAYGEYGATYKCSRGEGLGGVRVHQSDAESAGSWQGTPNWLHIEIDQVMAKDAARFRKAWASCPYP