Scaffold Ga0208966_1000098

Overview

Basic Information

• Taxon OID: 3300027586
• Scaffold ID: Ga0208966_1000098
• Source Dataset Name: Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27071
• Total Scaffold Genes: 64
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (17.19%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies

Source Dataset Sampling Location

• Location Name: Great Lakes, Michigan, USA
• Coordinates
  • Lat. (^o): 44.701094
  • Long. (^o): -82.854085

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002303	Metagenome / Metatranscriptome	573	Y
F020010	Metagenome	226	Y
F070108	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208966_10000984	F020010	N/A	MATSNFHNVNATNIFAVQLEDEWAYDDLVSNLESEFNNHSDYYAYGKSDPDELRSFPSTSIGSFSNSIFIEDDDVEIFVTPVIRSGYYDGVNLDWHVRYYVNGSENETYSDDINVLRISNKYIEFIENIFEKYSEPLVVTARFSNGETIYSKVA
Ga0208966_100009854	F002303	N/A	MDIREECYERATKFAIEYGFTNVSEHILDIMVSIMCTRDKSSYPGGGFVEAVVANDLYLAMSRADTDCRNNIFLLTMCKSNCFI
Ga0208966_100009855	F070108	N/A	MVFSLEEQMDIELILNEASAYGMSAEVEEYAQKYLNEGCTPVEAYQHAYNEWIK