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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300027586 Open in IMG/M |
| Scaffold ID | Ga0208966_1000021 Open in IMG/M |
| Source Dataset Name | Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRF (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 51967 |
| Total Scaffold Genes | 72 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 51 (70.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic → Freshwater Lentic Microbial Communities From The Great Laurentian Lakes, Mi, Usa For Biogeochemical Studies |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Great Lakes, Michigan, USA | |||||||
| Coordinates | Lat. (o) | 44.701094 | Long. (o) | -82.854085 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004789 | Metagenome / Metatranscriptome | 423 | Y |
| F024498 | Metagenome / Metatranscriptome | 205 | Y |
| F069735 | Metagenome | 123 | N |
| F078617 | Metagenome / Metatranscriptome | 116 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208966_100002121 | F078617 | GGA | MQTRVFLSGAIEDIQSDFKYTWRNQATSLLNHRGFKAVNPMDYALEEKDCQPKEIVDKNLFLQKSCDIILVEYTLLYRAYIGADFEMTWAHLNNQPVIVWAHQDLQHRIYLKFLATKVADTLEEAVEYISNTYPSTK |
| Ga0208966_100002133 | F004789 | GGAG | MTLPGTYQNPSTKPCWTFCSSCNRCQDKGRYTNCNSCSGRYDPMGRTDPHPEDFCDCKNGVLRWKTKEGKLIMTRFKTNPFKGQVRYEKKSGDERDWDSYVADMREKMDDPKWNPIAIYEED |
| Ga0208966_100002142 | F069735 | AGG | MNLQSLQKMNELLTSFIGPQIEEIISAYTTDSSNSLYFVSIPDVDTLDLGIHEMASLVARTSNVYGRVARLAGMARAQYKLIEGSYKKVYKANRVGKNEAEREANALEAAESEYTALITAEAIVNLAESMELAARIASESSRKLIDKIQSMQVASAREEKGYFSDKDFNTY |
| Ga0208966_100002152 | F024498 | AGGAG | MSKVAWNYIVPVKLPADLKGVTPGKLPANLLVSVPGGGKLHRLAANAWMAMVAKAKAEGVELKPTSSRRYL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |