Scaffold Ga0209150_1002062

Overview

Basic Information

• Taxon OID: 3300027585
• Scaffold ID: Ga0209150_1002062
• Source Dataset Name: Marine gutless worms symbiont microbial communities from Max Planck institute for Marine Microbiology, Germany - Olavius algarvensis Type A CAVOLI.3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4878
• Total Scaffold Genes: 2
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Deuterostomia → Chordata → Craniata → Vertebrata → Gnathostomata → Teleostomi → Euteleostomi → Sarcopterygii → Dipnotetrapodomorpha → Tetrapoda → Amniota → Sauropsida → Sauria → Archelosauria → Testudinata → Testudines → Cryptodira → Durocryptodira → Testudinoidea → Emydidae → Trachemys → Trachemys scripta → Trachemys scripta elegans (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Annelida → Digestive System → Digestive Tube → Extracellular Symbionts → Marine Gutless Worms Symbiont → Marine Gutless Worms Symbiont Microbial Communities From Various Locations

Source Dataset Sampling Location

• Location Name: Max Planck institute for Marine Microbiology, Germany
• Coordinates
  • Lat. (^o): 51.321602
  • Long. (^o): 12.394572

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004920	Metagenome	418	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209150_10020621	F004920	AGG	VQLNSTMCLISGTLRSTPLPWLPVLSNIEPPALRRKAATDKLVEKIVKHDSWPIQPDILKPPLLRLTSRKTLWLDLQPVDIKSRWRHNWKSAQVVNSHLVCDPTILQPRFDFPRQQWSLLNRFCREQRHCGACRRKWRLTDTDLCPIGESQMMSHIVESCPLIKLNGGLSWLHSVDEDAVLWLTNYGS