Scaffold Ga0209527_1000032

Overview

Basic Information

• Taxon OID: 3300027583
• Scaffold ID: Ga0209527_1000032
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25829
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (73.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000503	Metagenome / Metatranscriptome	1073	Y
F002873	Metagenome / Metatranscriptome	524	Y
F022384	Metagenome / Metatranscriptome	214	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209527_100003217	F000503	AGGAG	MSAEAPGRTSIMPLRDLVRLYRCYAGTFGEPVALSAFGLTNTETERLFSGYDEDYHISRFFHFSEAAGEKFLVNGIPATHVSLDAEIETIL
Ga0209527_100003219	F022384	N/A	MFAALVLDYRLAFLFLAALSLGSAVPLAFGWARVLPEEPLPFGHAEDSFRRAKNSPAAPVLMSKKRDPFAIVLLLCVTVSYACQLPGVPRGMGFGSIPTVIPHNTRGWIEFAAIWFLVLIPGFASVYSLLRPNFLRVPLIAAGMMILLLWLLAAPLRAALEAVS
Ga0209527_100003220	F002873	N/A	MILGIAGLTFVLGANYLLVYTLKQQVTRERERQDRTYWSAFNAVEQFGEHADQVSEQKAKAALDEARQKGLSKIRARILQNYLEDLEHCYQGDRESCTKANTDMNEAIRVPAERK