NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209527_1000031

Scaffold Ga0209527_1000031


Overview

Basic Information
Taxon OID3300027583 Open in IMG/M
Scaffold IDGa0209527_1000031 Open in IMG/M
Source Dataset NameForest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26092
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)22 (84.62%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location
Location NameAlgoma, Ontario, Canada
CoordinatesLat. (o)46.42Long. (o)-83.37Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000262Metagenome / Metatranscriptome1428Y
F002627Metagenome / Metatranscriptome542Y
F002695Metagenome / Metatranscriptome536Y
F045239Metagenome / Metatranscriptome153Y

Sequences

Protein IDFamilyRBSSequence
Ga0209527_100003111F002695N/AMVSIFILVFAVIALVRFGISQWRAIWISAANQELSDSLQLAAGIDGATIGAGDFSTLLQLCTELSPDLKKTSPWLKEVSVYYRAMTAFEQLFRVKVPSISSWAKGEMQICSRYAAVVLDQSLSMNLDRQLAARAN
Ga0209527_100003112F000262AGGMKHTLVVGILAFLALLSVGCNGTAYGILQPNPGDLCKCLPIEPDILDFRHLAKHVPIPSIAAQEIGVDTILSWTQDAIVAPDAPRTGRELQVFHVANAFLQEASVNAADCDVHFEISMTADKSAPRVIVETPVDSEFCSARQNAQSQLAKHKFVLDSQHGGELPLALPVDVLGMAFEDFDHNRGSVQVQTIWELHPAIVTIP
Ga0209527_100003113F045239AGGAMNETPTDPYLARRPRVATSRTLIWIEEPRFQGWGCPRCAWVFNPLGSPDGKSFEEMKEEYERLRDKEFAAHACAEYPRANMRKA
Ga0209527_10000316F002627GGAGMPYPSRGTAKPLFILLFVILPALAPAGSALAQEKKVAQQNGVDNSKMGAYRALAQHIYSDFQKGDLAAAALMAKVLERVWDKAEDYGGDTALSKTNHGLFEQIDKAMDDFISPITDAKGKALDPAKVKAAYNAYLEKLKLAD
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Institute for Fundamental Biomedical Research
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