Scaffold Ga0209527_1000012

Overview

Basic Information

• Taxon OID: 3300027583
• Scaffold ID: Ga0209527_1000012
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 35844
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003414	Metagenome / Metatranscriptome	488	Y
F003702	Metagenome / Metatranscriptome	473	Y
F003732	Metagenome / Metatranscriptome	471	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209527_100001216	F003732	GGGGG	MSMKEKLLFVWLLAVVAFSFLFRHFWASPVYAIGRAVALNLVSLPGLVKLAAGICGIGFL
Ga0209527_10000122	F003414	GGTGG	MRKRPAIPWASEVQVRPVTQPSTAEASSVPDDLLPELQFELPPFPSQLTTVRTAPPRPHVSTPPSSSTGNDAEKLEAPTIALQVTPQESAVAQQQTRHSLGIAEKNLESARGKNLNAAQSDLVSKITGFIKDAREAAEIADWSRARSLAKKAQVLSEELAGSL
Ga0209527_100001236	F003702	AGAAGG	MKRHVLTVLMSLAAAMVSGAIFVVALFHQFALVEVAASTLTGLQVFFLSSAIGDLLDEQKEPNRARNSAVALMTVFLVAFYSLTRYFH