Scaffold Ga0209527_1000004

Overview

Basic Information

• Taxon OID: 3300027583
• Scaffold ID: Ga0209527_1000004
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 43005
• Total Scaffold Genes: 42
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (83.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005426	Metagenome / Metatranscriptome	401	Y
F015193	Metagenome / Metatranscriptome	256	Y
F035927	Metagenome / Metatranscriptome	171	Y
F043663	Metagenome / Metatranscriptome	156	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209527_100000411	F035927	GAG	MVTIKVKDGTPQDAETLCITCRWAHIVKGFRVSEKEIFCRYLTDDRPVRFPVSQCNSSDDRRTPSKRDMEQIAWILLTKKAGRTIGFVTAKQFREIEGDDAEIIPAAAIDTTDTEE
Ga0209527_100000428	F005426	AGG	MTEERKFAILFAATILSARKLLDMDPDKPSVAKGFFVDRAIEDAAFILERIDARWPTIVNSFTANTA
Ga0209527_100000429	F015193	AGGAG	MPSYDSFMCPNCEGHFRVIWPQPLPNYTDPCSNVKMKCPDCGEVTELYAYLIDRVLQAPEPGMLSVEVLAISPRDPNPDPYARSYYWQKVWLCQEARYRTTYRPVK
Ga0209527_100000433	F043663	GGGGG	MRVLFDILKKDRKGTFQWLEAASDIETAKARVLQLSSESPDEFIVFREVDLQVVATSRQFREQRLSFAD