Scaffold Ga0209527_1000001

Overview

Basic Information

• Taxon OID: 3300027583
• Scaffold ID: Ga0209527_1000001
• Source Dataset Name: Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M2 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54242
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 40 (85.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil → Forest Soil Microbial Communities From Multiple Locations In Canada And Usa

Source Dataset Sampling Location

• Location Name: Algoma, Ontario, Canada
• Coordinates
  • Lat. (^o): 46.42
  • Long. (^o): -83.37

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000168	Metagenome / Metatranscriptome	1799	Y
F002657	Metagenome / Metatranscriptome	539	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209527_100000131	F000168	N/A	MPREKQIATDAPGELARRITEALVRERVVPRFVDSYVVENGRHALQVHAPLYRDLLALLQREALLALAVRALAIVCNAPQPAGKSKSRPMPRRDATAFRRKFLASLTRQQGWTAGDALDFQRDLHMYEELLARGAAKRRSRKPFEAADHPFVDRCAFLLDSSFMEKARLAASKALTGIEELAASVTQQVRGE
Ga0209527_100000140	F002657	AGGAGG	MPRFPARSFAAILAAAVLLCPSSFAFDTPLSDQAVREAYFLGQRGDETMATFLNKYTKLLKAPKTGPDIASVTVLTPFALLVQQSSQHSSGYSAQQAAIDHRNQEEFVRIVVQIQLTNSYAAYIVRPTGSRSGSPNGFTPRPYDFWKDFDVKVSSDDKKLRPFSSAGQPNVLCSDEGGCELTGATLQLDFSAEDFASGSATIDVNPPEGDPISVDFDLDHLR