NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209651_1095133

Scaffold Ga0209651_1095133


Overview

Basic Information
Taxon OID3300027581 Open in IMG/M
Scaffold IDGa0209651_1095133 Open in IMG/M
Source Dataset NameFreshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)844
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameLake Michigan, USA
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F048121Metagenome / Metatranscriptome148N
F062446Metagenome / Metatranscriptome130Y
F082109Metagenome / Metatranscriptome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0209651_10951331F048121N/ATNTQYTWQVKATTGQLVVAPKSYPTLRGAKIASKRFANKTGGSVVSVSAK
Ga0209651_10951332F082109N/AMWTPIEIFLLTLLLNHSPTKSERLSVKEVIQNREAQLLVESVGLRNDF
Ga0209651_10951333F062446AGGAMTFKPIKVIAFMLIVLAWILMTFFFVGCANVSYKTIPDGMSEDAQDYPTKYNMMDSPDGRRNPNAQVNIFGATY

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