Scaffold Ga0209651_1005347

Overview

Basic Information

• Taxon OID: 3300027581
• Scaffold ID: Ga0209651_1005347
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4381
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005089	Metagenome / Metatranscriptome	412	Y
F014004	Metagenome / Metatranscriptome	266	Y
F042896	Metagenome / Metatranscriptome	157	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209651_100534710	F005089	N/A	MNVLDLFESIKLTETLALENYNQRNGVVDYRLDGVCNHYFPIWNDNEPSFKSGEIVLTCKVLKTVKGQLRYTFQVNGKRVAEKAIKSEFIKLGAFN
Ga0209651_100534712	F042896	N/A	MTSTIFVKFSYENRVSEEIPIQVELDLSKNSNRRKLLNRLLKSNSNITEVTLLSQTK
Ga0209651_100534713	F014004	N/A	MQTTLTLQVTEVRFDFDDLDFTPEEQQAVVDDVLGNVFEVEVDDANDDREVADVLVEEVTDYAGWCVVFLNYRHVTN