Scaffold Ga0209651_1001397

Overview

Basic Information

• Taxon OID: 3300027581
• Scaffold ID: Ga0209651_1001397
• Source Dataset Name: Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.SN (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8638
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Pirellulales → Pirellulaceae → Blastopirellula → Blastopirellula marina (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Michigan, USA
• Coordinates
  • Lat. (^o): 43.1998
  • Long. (^o): -86.5698

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034165	Metagenome / Metatranscriptome	175	Y
F056554	Metagenome / Metatranscriptome	137	Y
F090310	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209651_100139710	F090310	AGGAGG	VSSVLRTIADRLATGLQSVTWSIPSTTVERRNWANIDVDAMSVPKVFVIPGSADVTRISRTHMQVDYSVTVFVGRHVTTDGEVDGMLDLADRVMLYVRAHSFGAGVTWPAGVTSPQTVSIDLNPDDALTERNVWRAVITATYRVFESNVLPTV
Ga0209651_10013977	F056554	AGGA	MAISLGKDASAPPFGEGIISATFTEECETVDISNRSNIGGSAGAPGRRVSKAGFVTKTWEIECHDPDGLITSLTAAGTAGSFSIMSVSENIGVDGAVTYNVTAKEF
Ga0209651_10013978	F034165	GAGG	MPIGSVEITLGKDVTITGVTNARSCTVTNSASEVDVTKFGDTSRKFRKALIEQTIELECVDAPGVSIGGTFTISGTQTGNATYICTNIARSQPLDGIETFTVSGSRTVSA